{ "_id": "6a141917acfb0bcc41d3cded", "Package": "grmsem", "Title": "Genetic-Relationship-Matrix Structural Equation Modelling\n(GRMSEM)", "Version": "1.1.0", "Authors@R": "c(\nperson(\"Beate\", \"StPourcain\", email = \"Beate.StPourcain@mpi.nl\", comment = c(ORCID = \"0000-0002-4680-3517\"), role = c(\"aut\", \"cre\")),\nperson(\"Alexander\", \"Klassmann\", email = \"alex.klassmann@koeln.de\", role = c(\"ctb\"))\n)", "Maintainer": "Beate StPourcain ", "Description": "Quantitative genetics tool supporting the modelling of\nmultivariate genetic variance structures in quantitative data.\nIt allows fitting different models through multivariate\ngenetic-relationship-matrix (GRM) structural equation modelling\n(SEM) in unrelated individuals, using a maximum likelihood\napproach. Specifically, it combines genome-wide genotyping\ninformation, as captured by GRMs, with twin-research-based SEM\ntechniques, St Pourcain et al. (2017)\n, Shapland et al. (2020)\n.", "License": "GPL-3", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "7.1.0", "VignetteBuilder": "knitr", "NeedsCompilation": "no", "URL": "https://CRAN.R-project.org/package=grmsem,\nhttps://gitlab.gwdg.de/beate.stpourcain/grmsem", "BugReports": "https://gitlab.gwdg.de/beate.stpourcain/grmsem/-/issues", "Packaged": { "Date": "2026-05-25 09:35:02 UTC", "User": "root" }, "Author": "Beate StPourcain [aut, cre]\n(), Alexander Klassmann\n[ctb]", "Repository": "https://bstpourcain.r-universe.dev", "Date/Publication": "2021-01-29 08:20:08 UTC", "RemoteUrl": "https://github.com/cran/grmsem", "RemoteRef": "HEAD", "RemoteSha": "c9847e92ea31ac2b6cfc35d751e2a818943d98f2", "MD5sum": "b564ad9fad6aef3107c742ceefd39392", "_user": "bstpourcain", "_type": "src", "_file": "grmsem_1.1.0.tar.gz", "_fileid": "f579b132e5851932a23b346978f815a7c1acbd1bdedbb82bf1193bfe4551335b", "_filesize": 1412014, "_sha256": "f579b132e5851932a23b346978f815a7c1acbd1bdedbb82bf1193bfe4551335b", "_created": "2026-05-25T09:35:02.000Z", "_published": "2026-05-25T09:40:39.296Z", "_distro": "noble", "_jobs": [ { "job": 77689486754, "time": 176, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "7195640481" }, { "job": 77689486758, "time": 191, "config": "linux-release-x86_64", "r": "4.6.0", "check": "WARNING", "artifact": "7195644427" }, { "job": 77689486746, "time": 236, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "WARNING", "artifact": "7195651161" }, { "job": 77689486739, "time": 303, "config": "macos-release-arm64", "r": "4.6.0", "check": "WARNING", "artifact": "7195660974" }, { "job": 77689100701, "time": 171, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7195593531" }, { "job": 77689486774, "time": 101, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7195620173" }, { "job": 77689486775, "time": 187, "config": "windows-devel", "r": "4.7.0", "check": "WARNING", "artifact": "7195643480" }, { "job": 77689486796, "time": 192, "config": "windows-oldrel", "r": "4.5.3", "check": "WARNING", "artifact": "7195644568" }, { "job": 77689486816, "time": 181, "config": "windows-release", "r": "4.6.0", "check": "WARNING", "artifact": "7195641833" } ], "_buildurl": "https://github.com/r-universe/bstpourcain/actions/runs/26393653034", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/grmsem", "_commit": { "id": "c9847e92ea31ac2b6cfc35d751e2a818943d98f2", "author": "Beate StPourcain ", "committer": "cran-robot ", "message": "version 1.1.0\n", "time": 1611908408 }, "_maintainer": { "name": "Beate StPourcain", "email": "beate.stpourcain@mpi.nl", "login": "bstpourcain", "description": "", "uuid": 49073572, "orcid": "0000-0002-4680-3517" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5", "role": "Depends" }, { "package": "msm", "version": ">= 1.6", "role": "Imports" }, { "package": "numDeriv", "role": "Imports" }, { "package": "optimParallel", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "bookdown", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" } ], "_owner": "cran", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "bstpourcain", "count": 1, "uuid": 49073572 } ], "_userbio": { "uuid": 49073572, "type": "user", "name": "bstpourcain" }, "_downloads": { "count": 210, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/grmsem" }, "_searchresults": 1, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/grmsem.html", "manual.pdf" ], "_realowner": "bstpourcain", "_cranurl": false, "_releases": [ { "version": "1.1.0", "date": "2021-01-29" } ], "_exports": [ "grm.bin.input", "grm.input", "grmsem.biher", "grmsem.fcoher", "grmsem.fit", "grmsem.stpar", "grmsem.var" ], "_datasets": [ { "name": "fit.large", "title": "Prefitted model: large data set", "object": "fit.large", "class": [ "grmsem.fit" ], "fields": [], "table": false, "tojson": false }, { "name": "G.small", "title": "Symmetric GRM data: small data set", "object": "G.small", "class": [ "matrix", "array" ], "fields": {}, "rows": 100, "table": true, "tojson": true }, { "name": "ph.large", "title": "Phenotype data: large data set", "object": "ph.large", "class": [ "matrix", "array" ], "fields": [ "Y1", "Y2", "Y3", "Y4" ], "rows": 5000, "table": true, "tojson": true }, { "name": "ph.small", "title": "Phenotype data: small data set", "object": "ph.small", "class": [ "matrix", "array" ], "fields": [ "Y1", "Y2", "Y3" ], "rows": 100, "table": true, "tojson": true } ], "_help": [ { "page": "fit.large", "title": "Prefitted model: large data set", "topics": [ "fit.large" ] }, { "page": "G.small", "title": "Symmetric GRM data: small data set", "topics": [ "G.small" ] }, { "page": "grm.bin.input", "title": "grm import function", "topics": [ "grm.bin.input" ] }, { "page": "grm.input", "title": "grm import function", "topics": [ "grm.input" ] }, { "page": "grmsem.biher", "title": "grmsem bivariate heritability estimation function.", "topics": [ "grmsem.biher" ] }, { "page": "grmsem.fcoher", "title": "grmsem factorial co-heritability and co-environmentality estimation function.", "topics": [ "grmsem.fcoher" ] }, { "page": "grmsem.fit", "title": "grmsem model fitting function", "topics": [ "grmsem.fit" ] }, { "page": "grmsem.stpar", "title": "grmsem standardised parameters function", "topics": [ "grmsem.stpar" ] }, { "page": "grmsem.var", "title": "grmsem variance estimation function", "topics": [ "grmsem.var" ] }, { "page": "ph.large", "title": "Phenotype data: large data set", "topics": [ "ph.large" ] }, { "page": "ph.small", "title": "Phenotype data: small data set", "topics": [ "ph.small" ] } ], "_rundeps": [ "cli", "expm", "generics", "glue", "lattice", "lifecycle", "magrittr", "Matrix", "msm", "mvtnorm", "numDeriv", "optimParallel", "pillar", "pkgconfig", "rlang", "survival", "tibble", "utf8", "vctrs" ], "_vignettes": [ { "source": "grmsem.Rmd", "filename": "grmsem.html", "title": "Vignette for package grmsem", "author": "Beate St Pourcain and Alexander Klassmann", "engine": "knitr::rmarkdown", "headings": [ "Synopsis", "Download and installation", "Package", "Data sets", "Input files", "Genetic relationship matrix", "Phenotype file", "GREML AE models", "Multivariate AE models", "Model descriptions", "Cholesky model", "Independent Pathway model", "IPC model", "Direct Symmetric model", "Estimation", "Examples", "Outline", "Tri-variate example", "Data simulation", "DS model", "Quad-variate example", "GREML versus GRM-SEM", "References" ], "created": "2021-01-29 08:20:08", "modified": "2021-01-29 08:20:08", "commits": 1 } ], "_score": 2, "_indexed": true, "_nocasepkg": "grmsem", "_universes": [ "bstpourcain" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.1.0", "date": "2026-05-25T09:37:19.000Z", "distro": "noble", "commit": "c9847e92ea31ac2b6cfc35d751e2a818943d98f2", "fileid": "aa3477361b4229052d51948bdfcfe19c72917c22d1c7c3d4d4060c199c283af9", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bstpourcain/actions/runs/26393653034" }, { "r": "4.6.0", "os": "linux", "version": "1.1.0", "date": "2026-05-25T09:37:22.000Z", "distro": "noble", "commit": "c9847e92ea31ac2b6cfc35d751e2a818943d98f2", "fileid": "c4219b9a63bba0f0c5fc31f616cc8ed58403439cef25e7a1160ce49e35945288", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bstpourcain/actions/runs/26393653034" }, { "r": "4.5.3", "os": "mac", "version": "1.1.0", "date": "2026-05-25T09:37:17.000Z", "commit": "c9847e92ea31ac2b6cfc35d751e2a818943d98f2", "fileid": "94bbca8c3eab37c3ccc8fa033be4fa9c4aaaa8baec8092c7c216df09c21fb54e", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bstpourcain/actions/runs/26393653034" }, { "r": "4.6.0", "os": "mac", "version": "1.1.0", "date": "2026-05-25T09:37:19.000Z", "commit": "c9847e92ea31ac2b6cfc35d751e2a818943d98f2", "fileid": "ffccf471c722d3e3b952ef75fb977851cd1e659423aa91c0297e48d09c6a4360", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bstpourcain/actions/runs/26393653034" }, { "r": "4.6.0", "os": "wasm", "version": "1.1.0", "date": "2026-05-25T09:36:58.000Z", "commit": "c9847e92ea31ac2b6cfc35d751e2a818943d98f2", "fileid": "da9a313404d308e87bb50ceb4b29db1a497a1dbf2ea2b930c132b81197b0d7a7", "status": "success", "buildurl": "https://github.com/r-universe/bstpourcain/actions/runs/26393653034" }, { "r": "4.7.0", "os": "win", "version": "1.1.0", "date": "2026-05-25T09:36:14.000Z", "commit": "c9847e92ea31ac2b6cfc35d751e2a818943d98f2", "fileid": "c0ec8552aa8dee516e520fe3fd8c691fb8904f86c1f5aa938d46a2e6289e4359", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bstpourcain/actions/runs/26393653034" }, { "r": "4.5.3", "os": "win", "version": "1.1.0", "date": "2026-05-25T09:36:47.000Z", "commit": "c9847e92ea31ac2b6cfc35d751e2a818943d98f2", "fileid": "d48f623ae3f653e183c7acf907d9f66b2e3578d500e12e7d94cc03d69c2574fe", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bstpourcain/actions/runs/26393653034" }, { "r": "4.6.0", "os": "win", "version": "1.1.0", "date": "2026-05-25T09:36:10.000Z", "commit": "c9847e92ea31ac2b6cfc35d751e2a818943d98f2", "fileid": "26a177711d89c8bd169c1a42424329af2d4135170c4feefb50d36bd51113be32", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bstpourcain/actions/runs/26393653034" } ] }